Bug reports

SLSMoleculeDetailViewController.m
initWithFram:reuseIdentifier. is deprecated.

SLSMoleculeSearchWithController.m
initWIthFrame:reuseIdentifier - 4 times

Molecules won't show certain simple molecules, all of a sudden. Won't show sucrose or glucose; I get a blank screen after "rendering."

I love the Molecules app. Pi Cubed is even nicer.
I have found a bug however.

A stray, unattached, inappropriate green atom Chlorine?) is appearing at times.

I am seeing 1 in the following molecules so far.
- 1 near one of the nitro groups in Octanitrocubane (Pub Chem #11762357)
- 1 near one of the nitro groups in Heptanitrocubane (Pub Chem #11732527)

There's also one that appears and disappears at some distance, and detached from the main molecule, when I pan/rotate around in the Octanitrocubane.

See screenshots at:
http://www.flickr.com/photos/55526376@N08/5794211584

Hey Brad, I am immensely impressed by the update to Molecules. I'm really looking forward to teaching organic chemistry with it now, with the additions of small molecules and PubChem support. I downloaded a few molecules that should have had double bonds (acetone, benzene) and triple bonds (benzyne, ethyne), but every bond was displayed as a single bond. I downloaded cyclohexane for comparison against benzene, and the geometries for both are definitely right, the bonds are all just displayed as single bonds.

Dear Brad Larson,

Just to let you know, when residues are disordered and therefore have no entries in a PDB file, a HUUUUGE bond is created between the first residue and the last residue. Does this mean you do not calculate bonds traditionally? (through distances between atoms).

Thanks,
Selenium

When the length of the first line (COMPND line) of a PDB file is less than 20 letters, there are no atoms loaded. Your attension on this problem will be appreciated.

Hi Brad Larson,

Can you please tell me how to fetch the content of pdf file in iphone , so that i can format it in my own choice. I have spend a lot of time on it, but not get solution of this problem.

Thanks
Dinesh Thakur

#pragma mark -
#pragma mark Database access

- (NSString *)applicationSupportDirectory;
{
NSArray *paths = NSSearchPathForDirectoriesInDomains(NSApplicationSupportDirectory, NSUserDomainMask, YES);
NSString *basePath = ([paths count] > 0) ? [paths objectAtIndex:0] : nil;

NSFileManager *fileManager = [NSFileManager defaultManager];
if ([fileManager fileExistsAtPath:basePath] == NO)
{

/// [fileManager createDirectoryAtPath:basePath attributes: nil];

Hi first cool app you made. i came to your site because i was looking to implement the VGA adapter support for my app. and i looked at your source to learn from it. i also tried you app and the vga support does not work its just black.
how does the mirroring vga support work. i wanna be able to see the same view on ipad as on vga but stil be able to controll the app from ipad. (mirror screen)

Am using XCode 3.2.2 (pre-release)

Version: 3.2 (10M2132)
Location: /Developer/XCode3.2

I have installed both 3.2 and older SDKs on different locations...

My errors are:
*** (repeating many times at different points in the source code)***
/Users//Documents/Molecules/SLSMoleculeTableViewController.m:37:0 /Users//Documents/Molecules/SLSMoleculeTableViewController.m:37: error: request for member 'contentSizeForViewInPopover' in something not a structure or union